[Location: Location_Category='OCEAN', Location_Type='SOUTHERN OCEAN']
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Sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analyses
Entry ID:
CEAMARC_CASO_200708_V3_PLANKTON_GENOMICS_PROTEOMICS
Summary
Abstract:
Large volumes of water (200 - 500 L) were filtered and fractionated by size for various planktonic components: eukaryotic phytoplankton, prokaryotic picoplankton, and marine viruses. Sample sites were chosen to generate the widest diversity, and included planktonic blooms, oligotrophic zones, small polynyas near sea ice, nearshore areas, and Antarctic bottom water from coastal, canyon and deepwater areas. Half of each sample will be used for DNA library construction, and the other half will be used for meta-proteomic analysis. Random shotgun sequencing of the marine genomic libraries should produce a metagenomic snapshot of planktonic life in a variety of marine habitats.
This work was completed as part of ASAC project 2899 (ASAC_2899).
Related URL
Geographic Coverage
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Spatial coordinates
Temporal Coverage
Start Date:
2007-12-17
Stop Date:
2008-01-28
Location Keywords
Science Keywords
Platform
Quality
No known quality issues.
GOS stands for Global Ocean Sampling. TFF- Tangential Flow Filtration.
Access Constraints
Genomic data will be made publicly available. Proteomic data release to participants in CEAMARC/CASO voyage only.
Use Constraints
This data set conforms to the PICCCBY Attribution License
(http://creativecommons.org/licenses/by/3.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=CEAMARC_... when using these data. Ancillary Keywords
Data Set Progress
COMPLETE
Data Center
Distribution
Distribution Media:
HTTP
Fees:
free
Personnel
Role:
INVESTIGATOR
Phone:
+61 2 9385 3516
Email:
r.cavicchioli at unsw.edu.au
Contact Address:
School Of Microbiology and Immunology
University Of New South Wales
City:
Sydney
Province or State:
NSW
Postal Code:
2052
Country:
Australia
Extended Metadata Properties
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Creation and Review Dates
DIF Creation Date:
2008-02-24
Last DIF Revision Date:
2013-02-19
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